my.parse.peaklist: my.parse.peaklist

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

my.parse.peaklist

Description

Read peak list files. This function reads peak list files and fills the data into a dataSet object. For NMR peak lists, the input should be formatted as two-columns containing numeric values (ppm, int). Further, this function will change ppm to mz, and add a dummy 'rt'. For MS peak data, the lists can be formatted as two-columns (mz, int), in which case the function will add a dummy 'rt', or the lists can be formatted as three-columns (mz, rt, int).

Usage

my.parse.peaklist(mSetObj = NA, foldername = "upload")

Arguments

mSetObj	Input the name of the created mSetObj (see InitDataObjects).
foldername	Name of the folder containing the NMR or MS peak list files to read.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on April 20, 2024, 8:13 p.m.