CalculateOraScore: Calculate ORA score
In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data
Description
Usage
Arguments
Author(s)
View source: R/enrich_path_stats.R
Description
Calculate the over representation analysis score
Usage
1
CalculateOraScore(mSetObj=NA, nodeImp, method)
Arguments
mSetObj
Input the name of the created mSetObj (see InitDataObjects)
nodeImp
Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality,
and "dgr" for out-degree centrality.
method
is "fisher" or "hyperg"
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Author(s)
View source: R/enrich_path_stats.R
Description
Calculate the over representation analysis score
Usage
1 | CalculateOraScore(mSetObj=NA, nodeImp, method)
|
Arguments
mSetObj |
Input the name of the created mSetObj (see InitDataObjects) |
nodeImp |
Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality, and "dgr" for out-degree centrality. |
method |
is "fisher" or "hyperg" |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.