calculatePPKs: Peak picking Method

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

Peak picking Method

Usage

calculatePPKs(object, object_mslevel, param, BPPARAM = bpparam(), msLevel = 1)

Arguments

object	MSnExp object, the trimmed or the original data.
object_mslevel	List, the parsed metabolomics scans produced by PeakPicking_prep.
BPPARAM	MulticoreParam method, used to set the parallel method. Default is bpparam().
msLevel	Numeric, to specifiy the msLevel, only 1 permitted for now. 2 will be supported in the near future.
xcmsSetParameters	Matrix, the parameters combination produced automatically according to
task	Numeric, task order for XCMS paramters table to run the peak picking and alignment.

Author(s)

Zhiqiang Pang [e-mail] Jeff Xia [e-mail] Mcgill University License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.