Man pages for xiangfstats/GenieR
Inference of demographic history from phylogeny
| att | Extraction of sorted sampling/coalescent times and... |
| branching.sampling.times | Extract sampling and coalescent times from a phylogenetic... |
| coalgen_hetero | Simulate coalescent times for heterochronous data. |
| coalgen.hetero | Simulation of coalescent times for heterochronous data. |
| coalgen_iso | Simulate coalescent times for isochronous data. |
| coalgen.iso | Simulation of coalescent times for isochronous data. |
| geniefit | A function to fit coalescent models to a given phylogenetic... |
| Geniefit | A function to fit coalescent models to a given phylogenetic... |
| genieR | genieR: Inference of demographic history from phylogeny |
| heterochronous.gp.stat | Extraction of sampling and coalescent times from a... |
| loglik | A function to calculate the log likelihood of a phylogenetic... |
| negllc_const | Function to calculate the loglikelihood of a constant... |
| negllc_expan | Function to calculate the loglikelihood of a expansion... |
| negllc_expo | Function to calculate the loglikelihood of a exponential... |
| negllc_log | Function to calculate the logistic of a logistic coalescent... |
| negllc_pexpan | Function to calculate the loglikelihood of a piecewise... |
| negllc_plog | Function to calculate the loglikelihood of a piecewise... |
| negllc_step | Function to calculate the loglikelihood of a step coalescent... |
