Inference of demographic history from phylogeny

att | Sort out sampling times, coalescent times and sampling... |

branching.sampling.times | Extract sampling and coalescent times from a phylogenetic... |

coalgen_hetero | Simulate coalescent times for heterochronous data. |

coalgen_iso | Simulate coalescent times for isochronous data. |

Geniefit | A function to fit coalescent models to a given phylogenetic... |

heterochronous.gp.stat | Extract sampling and coalescent times from a phylogenetic... |

loglik | A function to calculate the log likelihood of a phylogenetic... |

negllc_const | Function to calculate the loglikelihood of a constant... |

negllc_expan | Function to calculate the loglikelihood of a expansion... |

negllc_expo | Function to calculate the loglikelihood of a exponential... |

negllc_log | Function to calculate the logistic of a logistic coalescent... |

negllc_pexpan | Function to calculate the loglikelihood of a piecewise... |

negllc_plog | Function to calculate the loglikelihood of a piecewise... |

negllc_step | Function to calculate the loglikelihood of a step coalescent... |

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