‘ggtreeExtra’ extends the method for mapping and visualizing associated data on phylogenetic tree using ‘ggtree’. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by ‘ggtree’ with the grammar of ‘ggplot2’.
School of Basic Medical Sciences, Southern Medical University.
If you use
ggtreeExtra in published research. Please cite the paper:
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou, W Tang, T Feng, M Chen, L Zhan, T Wu, E Hu, Y Jiang*, X Bo* and G Yu*. ggtreeExtra: Compact visualization of richly annotated phylogenetic data. Molecular Biology and Evolution. 2021, 38(9):4039-4042. doi: 10.1093/molbev/msab166.
The development version from
if (!requireNamespace("devtools", quietly=TRUE)) install.packages("devtools") devtools::install_github("xiangpin/ggtreeExtra")
The released version from
if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") ## BiocManager::install("BiocUpgrade") ## you may need this BiocManager::install("ggtreeExtra")
Please refer to the online vignette.
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