sampleQcPlot.sampleDataset | R Documentation |
Generate a panel of sample QC plots across a list of qcMetrics
## S3 method for class 'sampleDataset'
sampleQcPlot(object, qcMetrics, annotation = NULL,
geom = c("scatter", "violin", "hist"), outliers = NULL, legend = T,
main = "QC", position = c("right", "bottom"), ncols = 5, show = TRUE)
object |
SampleDataset object |
qcMetrics |
a character string or a vector includes QC metrics to explore; if unspecified, all QC metrics in the SDS will be used. |
geom |
a character string indicating which visualization pattern to be used. One of strings 'scatter', 'violin' or 'hist' can be used. |
outliers |
a vector of IDs of outliers to show on the figure |
legend |
whether to include a legend or not |
position |
position of the legend |
annotations |
a character string of sample annotation to stratify by |
a list of grob objects
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