NetzGO: Calculating NetMoss Score

In xiaolw95/NetMoss: Identify Differential Bacteria from Network

Calculating NetMoss Score

Description

This is a function to calculate NetMoss score for each bacterium.

Usage

NetzGO(
  control_mat,
  case_mat,
  control_dist,
  case_dist,
  control_mod,
  case_mod,
  scaled
)

Arguments

control_mat	a matrix of integrated healthy network.
case_mat	a matrix of integrated diseased network.
control_dist	a distance matrix among healthy models.
case_dist	a distance matrix among diseased models.
control_mod	module division of each microbe in healthy network.
case_mod	module division of each microbe diseased network
scaled	logical.If TURE then the NetMoss score are scaled.

Value

NetMoss score and module division results of each bacterium.

Examples

data(TestData)
NetzGo(control_mat = TestData[[2]], case_mat = TestData[[1]],
    control_dist = TestData[[4]], case_dist = TestData[[3]],
    control_mod = TestData[[6]], case_mod = TestData[[5]], scaled = T)

xiaolw95/NetMoss documentation built on May 8, 2022, 11:03 p.m.