sim_plot: sim_plot

In xiaonui/vPan: An R package to analyze and visualize PAV results from pan-genome of "map-to-pan" strategy.

Description

sim_plot

Usage

sim_plot(
  sim_stat_res,
  chart_type = "box",
  box_width = c(0.8, 0.8),
  box_size = 1,
  box_color = NULL,
  box_fill = NULL,
  box_alpha = 0.5,
  box_outlier_size = NULL,
  errorbar_width = 0.8,
  errorbar_size = 1,
  errorbar_color = NULL,
  errorbar_alpha = 0.8,
  errorbar_point_size = 2,
  errorbar_point_color = NULL,
  jitter_width = 0.8,
  jitter_size = 1,
  jitter_color = NULL,
  jitter_alpha = 0.1,
  jitter_point_size = 2,
  jitter_point_color = NULL,
  path_size = 1,
  path_color = NULL,
  ribbon_fill = NULL,
  ribbon_alpha = 0.5,
  x_title = "Times",
  y_title = "Count",
  x_title_size = NULL,
  y_title_size = NULL,
  x_breaks = NULL,
  y_breaks = NULL,
  x_text_size = NULL,
  y_text_size = NULL,
  legend_show = T,
  legend_side = "top",
  legend_title = "",
  legend_title_size = NULL,
  legend_text_size = NULL
)

Arguments

sim_stat_res	The result from sim_stat.
chart_type	A character string of chart type. It should be one of "box", "errorbar", "jitter" and "ribbon".
box_width	A numeric vector giving the relative widths of the box and max/min line, ranging from 0 to 1.
box_size	The size of lines in boxplot.
box_color	A string of color or a named vector of colors for lines in boxplot.
box_fill	A string of color or a named vector of colors for boxes in boxplot.
box_alpha	The opacity of boxes, ranging from 0 to 1.
box_outlier_size	The size of the outliers in boxplot.
errorbar_width	A numeric vector giving the relative width of errorbar, ranging from 0 to 1.
errorbar_size	The size of errorbar.
errorbar_color	A string of color or a named vector of colors for errorbar.
errorbar_alpha	The opacity of errorbar, ranging from 0 to 1.
errorbar_point_size	The size of point representing the mean value.
errorbar_point_color	A string of color or a named vector of colors for point representing the mean value.
jitter_width	A numeric vector giving the relative width of jittered points, ranging from 0 to 1.
jitter_size	The size of jittered points.
jitter_color	A string of color or a named vector of colors for jittered points.
jitter_alpha	The opacity of jittered points, ranging from 0 to 1.
jitter_point_size	The size of point representing the mean value.
jitter_point_color	A string of color or a named vector of colors for point representing the mean value.
path_size	The size of path.
path_color	A string of color or a named vector of colors for path.
ribbon_fill	A string of color or a named vector of colors for ribbon.
ribbon_alpha	The opacity of ribbon, ranging from 0 to 1.
x_title	The text for the x-axis title.
y_title	The text for the y-axis title.
x_title_size	The size of x-axis title.
y_title_size	The size of y-axis title.
x_breaks	A numeric vector of break values on the x-axis.
y_breaks	A numeric vector of break values on the y-axis.
x_text_size	The size of tick labels on x-axis.
y_text_size	The size of tick labels on y-axis.
legend_show	Whether show the legend.
legend_side	The position of legend.
legend_title	The text for the legend title.
legend_title_size	The size of legend title.
legend_text_size	The size of legend item labels.

xiaonui/vPan documentation built on Dec. 23, 2021, 6:17 p.m.