Galapagos_datalist: Colonization and branching times of 8 terrestrial avifaunal...
In xieshu95/Test-Trasie: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Description
Format
Source
See Also
Description
Colonization and branching times of 8 terrestrial avifaunal clades in list
format, accepted by DAISIE_ML and DAISIE_loglik_all
Format
A list with 9 elements the first of which contains 2 elements and
the following 8 containing 5 components.
#' @description A list containing the colonization and branching times of the terrestrial
avifauna in the Galapagos where no distinction is made between types of
colonists. This list can be generated using the DAISIE_dataprep function,
which converts a user-specified data table into a data object, but the
object can of course also be entered directly. It is an R list object with
the following elements.
The first element of the list has two
components:
$island_age - the island age
$not_present - the number of mainland lineages that are not present
on the island
The following 8 elements of the list each contains
information on a single colonist lineage on the island and has 5
components:
$colonist_name - the name of the species or clade
that colonized the island
$branching_times - island age and stem
age of the population/species in the case of Non-endemic, Non-endemic_MaxAge
and Endemic anagenetic species. For cladogenetic species these should be
island age and branching times of the radiation including the stem age of
the radiation.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset all are equal to 1.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium
and non-equilibrium dynamics simultaneously operate in the Galapagos
islands. Ecology Letters 18: 844-852.
See Also
xieshu95/Test-Trasie documentation built on Dec. 18, 2019, 7:34 a.m.
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Description Format Source See Also
Description
Colonization and branching times of 8 terrestrial avifaunal clades in list format, accepted by DAISIE_ML and DAISIE_loglik_all
Format
A list with 9 elements the first of which contains 2 elements and
the following 8 containing 5 components.
#' @description A list containing the colonization and branching times of the terrestrial
avifauna in the Galapagos where no distinction is made between types of
colonists. This list can be generated using the DAISIE_dataprep function,
which converts a user-specified data table into a data object, but the
object can of course also be entered directly. It is an R list object with
the following elements.
The first element of the list has two
components:
$island_age - the island age
$not_present - the number of mainland lineages that are not present
on the island
The following 8 elements of the list each contains
information on a single colonist lineage on the island and has 5
components:
$colonist_name - the name of the species or clade
that colonized the island
$branching_times - island age and stem
age of the population/species in the case of Non-endemic, Non-endemic_MaxAge
and Endemic anagenetic species. For cladogenetic species these should be
island age and branching times of the radiation including the stem age of
the radiation.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset all are equal to 1.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.
See Also
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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