get_trans_rate: Calculate transition rate

Description Usage Arguments See Also

View source: R/DAISIE_rates.R

Description

Internal function. Calculates the transition rate given the current number of immigrant species and the per capita rate.

Usage

1
get_trans_rate(Tpars, island_spec)

Arguments

Tpars

A named list containing diversification rates considering two trait states:

  • [1]:A numeric with the per capita transition rate with state1

  • [2]:A numeric with the per capita immigration rate with state2

  • [3]:A numeric with the per capita extinction rate with state2

  • [4]:A numeric with the per capita anagenesis rate with state2

  • [5]:A numeric with the per capita cladogenesis rate with state2

  • [6]:A numeric with the per capita transition rate with state2

  • [7]:A numeric with the number of species with trait state 2 on mainland

island_spec

matrix with current state of system

See Also

Other rates calculation: DAISIE_plot_area, get_ana_rate, get_ext_rate, get_immig_rate, get_t_hor, island_area_vector, island_area, update_rates


xieshu95/Test-Trasie documentation built on Dec. 18, 2019, 7:34 a.m.