HierDplot: Plotting hierarchical diversity

In xinghuq/HierDmap: Visualizing the geo-biodiversity profiles and the hierarchical structure of biodiversity

Plotting hierarchical diversity

Description

Plotting hierarchical diversity map

Arguments

x	The diversity structure data produced from "HierDstr"
layout	The plot layout, either a valid string, a function, a matrix, or a data.frame, see "ggraph".
...	Arguments passing to igraph

Details

Plot the hierarchical diversity

Value

A HierDmap plot

Author(s)

[e-mail]

References

Pedersen, T. L., Pedersen, M. T. L., LazyData, T. R. U. E., Rcpp, I., & Rcpp, L. (2017). Package "ggraph". Retrieved January, 1, 2018.

Qin, X. (2019). HierDpart: partitioning hierarchical diversity and differentiation across metrics and scales, from genes to ecosystems. R package version 0.5. 0 https://cran.r-project.org/package=HierDpart.

Examples

### load data
f <- system.file('extdata',package='HierDpart')
infile <- file.path(f, "Island.gen")
### calculate diversity values
HierDisland=HierDq(infile,q=2,ncode=3,nreg = 4,r=c(7,4,2,3))
hie_mapdata=HierDstr(HierDisland)
HierDplot(hie_mapdata,layout = 'circlepack')

xinghuq/HierDmap documentation built on July 2, 2023, 10:46 a.m.