HierDstr: Formating the hierarchial diversity data structure used for...

In xinghuq/HierDmap: Visualizing the geo-biodiversity profiles and the hierarchical structure of biodiversity

Formating the hierarchial diversity data structure used for plotting

Description

This function formats the hierarchial diversity data used for plotting the diversity in a hierarchy.The function takes the values produced from "HierDq", and then formats it into igraph hierarchy.

Arguments

x	The diversity data from HierDq

Details

The plot has two forms, if the geographic coordinates are provided, it will plot the geo-map using "HierGeoplot", if not, it will plot the hierarchy map.

Value

The hierarchical diversity formated in a igraph format.

Author(s)

[e-mail]

References

Qin, X. (2019). HierDpart: partitioning hierarchical diversity and differentiation across metrics and scales, from genes to ecosystems. R package version 0.5. 0 https://cran.r-project.org/package=HierDpart.

Examples

### load data
f <- system.file('extdata',package='HierDpart')
infile <- file.path(f, "Island.gen")
### calculate diversity profile
HierDisland=HierDq(infile,q=2,ncode=3,nreg = 4,r=c(7,4,2,3))
### structure the diversity values
hie_mapdata=HierDstr(HierDisland)

xinghuq/HierDmap documentation built on July 2, 2023, 10:46 a.m.