rDivgeomap: Method of plot geographic diveristy map in R

In xinghuq/HierDmap: Visualizing the geo-biodiversity profiles and the hierarchical structure of biodiversity

Method of plot geographic diveristy map in R

Description

Plot the geographic map of genetic diversity profiles.

Usage

rDivgeomap(x, y , xlim = c(-180, 180), ylim = c(-90, 90), 
asp = 1, bg = "aliceblue", cols = "white", fill = T, 
border = "lightgrey", wrap = c(-180, 180), 
col =grDevices::rgb(red = 0, green = 0, blue = 1, alpha = 0.3), 
size, pch = 20, ...)

Arguments

x	The longitude of the location
y	The latitude of the location
xlim	Used to plot the range of the longitude in world map.
ylim	The range of the latitude in a world map.
asp	Plot parameter used in rgeos
bg	Plot parameter, colour pattern used to fill the points
cols	The colour of background
fill	Fill the points, default is True.
border	The border of map
wrap	The range of coordinates
col	The colour of points
size	The size of the diversity in a location.
pch	The plot parameter, the indicator of the point.
...	Arguments passing to regos plot

Details

This function plot geographic map using "rgeos", a class for representing polygons composed of multiple contours, some of which may be holes.

Value

A diversity map in a world map

Author(s)

[e-mail]

References

Wickham, H. (2011). ggplot2. Wiley Interdisciplinary Reviews: Computational Statistics, 3(2), 180-185.

Bivand, R., & Rundel, C. (2017). rgeos: interface to geometry engine-open source (GEOS). R package version 0.3-26.

Qin, X. (2019). HierDpart: partitioning hierarchical diversity and differentiation across metrics and scales, from genes to ecosystems. R package version 0.5. 0 https://cran.r-project.org/package=HierDpart.

Examples

data(Dprofile)
rDivgeomap(Dprofile$Longitude,Dprofile$Latitude,size=normalize(Dprofile$Dq1)*10)

xinghuq/HierDmap documentation built on July 2, 2023, 10:46 a.m.