Man pages for xinghuq/HierDpart
Partitioning Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems
| boot.ppDeltaD | Bootstrapping test of pairwise allelic differentiation (Delta... |
| CorDdPlot | Plot the relation between genetic differentiation (Delta D)... |
| COR_DeltaDd | Function for calculating pairwise Delta D and correlation... |
| COR_detaDd | Function to calculate pairwise detaD and correlation between... |
| COR_Fstd | Function for calculating pairwise Fst and correlation... |
| DeltaDcorplot | Plot correlation matrix for pairwise Delta D |
| DetaDcorplot | Plot correlation matrix for pairwise deta D. |
| HierAr | Calculating hierarchical allelic richness |
| HierD | Function for calculating and decomposing genetic diversity... |
| HierDjost | Hierarchical DJost |
| HierFst | Function for calculating hierarchical genetic differentiation... |
| HierHe | Function for calculating hierarchical heterozygosity |
| HierJd | Hierarchical Jaccard dissimilarity |
| Hierpertest | Test the significance among aggregates (regions,... |
| IDIP | Function for decomposing diversity (genetic or species... |
| Ldisper | Test significance of dispersion among subaggregate within... |
| permutate.DeltaD | Permutation test for allelic differentiation (Delta D) |
| plot.aggregates | Plot aggregates with dispersions (variances) |
| plotdiff1 | Plot genetic differentiation (Delta D) across loci |
| plot.pcoa.aggregate | Draw the aggregation plot for allelic differentiation |
| print.boot.ppDeltaD | Print the bootstrapping result for pairwise allelic... |
| pwag.permutest | Permutation test for allelic differentiation (Delta D) among... |
| pwDeltaD | Pairwise Shannon differentiation (Delta D) |
| qD | Function for calculating genetic diversity profile (q=0,1,2) |
| qDplot | Plot the genetic diversity profiles (q=0,1,2) |
| Str | Function for generating the structure for HierDpart format |
