plotdiff1: Plot genetic differentiation (Delta D) across loci

In xinghuq/HierDpart: Partitioning Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems

Plot genetic differentiation (Delta D) across loci

Description

Plot genetic differentiation (Delta D, Gaggiotti OE, et al, 2018) across loci.

Usage

plotdiff1(x, ncode)

Arguments

x	Genetic data, should be genepop format
ncode	The coding type of your genetic data.

Details

Function generates two genetic differentiation (Delta D) plots, a box plot and a scatter plot

Author(s)

[e-mail]

References

Qin, X., & Gaggiotti, O. E. (2022). Information-based summary statistics for spatial genetic structure inference. Molecular Ecology Resources, 22(6), 2183-2195.

Gaggiotti, O. E., Chao, A., Peres-Neto, P., Chiu, C. H., Edwards, C., Fortin, M. J., ... & Selkoe, K. A. (2018). Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales. Evolutionary Applications.

See Also

DeltaDcorplot

Examples

##plot genetic differentiation across loci
# example genepop file
f1 <- function(f) system.file("extdata", f,package="HierDpart")
plotdiff1(f1("Island.gen"),ncode=3)

xinghuq/HierDpart documentation built on March 21, 2023, 6:43 p.m.