API for xqzou/MMRDetect
Mutational Signature-based Classifier for Detecting Mismatch Repair Deficiency in Tumors
| Global functions | |
|---|---|
| Calculae_Cossim_catalogue_RepIndel | Man page Source code |
| GenCatalogue | Man page Source code |
| Generate_CossimVector_SingleSample_RepIndel | Man page Source code |
| MMRDclassifier | Man page |
| MMRDetect.classify | Man page Source code |
| MMRDetect.compute.Repindel.similarity | Man page Source code |
| MMRDetect.compute.Repindelcatalogue.similarity | Man page Source code |
| MMRDetect.compute.subcatalogue.exposure | Man page Source code |
| MMRDetect.compute.subcatalogue.similarity | Man page Source code |
| MMRDetect.compute.variables | Man page Source code |
| MMRDetect.train | Man page Source code |
| MMRKO_indelsig | Man page |
| MMRKO_subsig | Man page |
| SigCossim | Man page Source code |
| cos_similarity | Man page Source code |
| finalcaller | Source code |
| findsmallestrep | Man page Source code |
| gen_indelmuttype_MMRD | Man page Source code |
| get_all_factors | Man page Source code |
| indel_classifier | Man page Source code |
| mh_indel_v2 | Man page Source code |
| mhcaller | Man page Source code |
| prepare.indel.df.tab | Source code |
| repcaller | Source code |
| repcaller_del | Source code |
| subtype_indel_mmrd | Man page Source code |
| tandemcount_v2 | Source code |
