Files in xqzou/MMRDetect
Mutational Signature-based Classifier for Detecting Mismatch Repair Deficiency in Tumors
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
MMRDetect.Rproj
NAMESPACE
R/.DS_Store
R/Gen_catalogues.R
R/MMRDetect.classify.R
R/MMRDetect.compute.variables.R
R/MMRDetect.train.R
README.md
data/.DS_Store
data/MMRDclassifier.rda
data/MMRKO_indelsig.rda
data/MMRKO_indelsigCT.rda
data/MMRKO_subsig.rda
data/MMR_subsig.rda
data/PancanSig.rda
data/indelsig_template.rda
example/.DS_Store
example/MMRDetect_classified.txt
example/breast26.R
example/breast26_indels.txt
example/breast26_subs.txt
example/exposure_Breast.txt
example/sample_feature_summary_Breast.txt
example/subsig_exposure_Breast.txt
man/Calculae_Cossim_catalogue_RepIndel.Rd
man/GenCatalogue.Rd
man/Generate_CossimVector_SingleSample_RepIndel.Rd
man/MMRDclassifier.Rd
man/MMRDetect.classify.Rd
man/MMRDetect.compute.Repindel.similarity.Rd
man/MMRDetect.compute.Repindelcatalogue.similarity.Rd
man/MMRDetect.compute.subcatalogue.exposure.Rd
man/MMRDetect.compute.subcatalogue.similarity.Rd
man/MMRDetect.compute.variables.Rd
man/MMRDetect.train.Rd
man/MMRKO_indelsig.Rd
man/MMRKO_subsig.Rd
man/SigCossim.Rd
man/cos_similarity.Rd
man/findsmallestrep.Rd
man/gen_indelmuttype_MMRD.Rd
man/get_all_factors.Rd
man/indel_classifier.Rd
man/mh_indel_v2.Rd
man/mhcaller.Rd
man/subtype_indel_mmrd.Rd
tests/.DS_Store
tests/testthat.R
vignettes/.gitignore
vignettes/MMRDetect.Rmd
