commParams: Common Parameters used by functions of 'remiod'

In xsswang/remiod: Reference-Based Multiple Imputation for Ordinal/Binary Response

Common Parameters used by functions of remiod

Description

Common Parameters used by functions of remiod

Arguments

object	object inheriting from class 'remoid'
trtvar	the name of treatment variable. When necessary, its reference category, i.e. control arm, can be set in refcats argument.
method	a method for obtaining multiple-imputed dataset. Options include MAR, J2R, CR, and delta adjustment. Default is MAR.
delta	specific value used for Delta adjustment, applicable only for method="delta".
algorithm	either algorithm tang_seq proposed by Tang (2018) or jags the original method inherited in JAGS (Plummer 2003).
model_order	optional. manually specify an order for imputation models.
ord_cov_dummy	optional. specify whether ordinal variables should be treated as categorical variables or continuous variables when they are included as covariates in the sequential imputation models. Default is TRUE, dummy variables will be created accordingly.
rinv	a small number used to adjusting Fish information matrix
scheme	scheme of distribution used for proposing coefficients of imputation models. scheme=1: beta ~ N( mean + inv(I)*score, inv(I)); scheme=2: beta ~ N( mean , inv(I)).
subset	subset of parameters/variables/nodes (columns in the MCMC sample). Follows the same principle as the argument monitor_params and selected_parms.
exclude_chains	optional vector of the index numbers of chains that should be excluded
start	the first iteration of interest (see window.mcmc)
end	the last iteration of interest (see window.mcmc)
progress.bar	character string specifying the type of progress bar. Possible values are "text" (default), "gui", and "none" (see update). Note: when sampling is performed in parallel it is not possible to display a progress bar.
seed	optional; seed value (for reproducibility)
include	logical, if TRUE, raw data will be included in imputed data sets with imputation ID = 0.
mi.setting	a list of arguments related to multiple imputation, including trtvar, algorithm, method, include, exclude_chains, thin, start, end, and seed.

xsswang/remiod documentation built on Feb. 20, 2023, 9:29 a.m.