prep_MCMC | R Documentation |
Extract MCMC samples of monitored parameters from JointAI object. Code from JointAI.
prep_MCMC(object, treatment = NULL, delta = 0, start = NULL, end = NULL, thin = NULL, subset = FALSE, exclude_chains = NULL, warn = TRUE, mess = TRUE, ...)
object |
an object of class JointAI |
treatment |
the variable name of treatment. Reference level of treatment should be coded as 0. |
delta |
specific value used for Delta adjustment, applicable only for method="delta". |
start |
first iteration to be used |
end |
last iteration to be used |
thin |
thinning to be applied |
subset |
subset of parameters (columns of the mcmc object) to be used |
exclude_chains |
optional vector of numbers, indexing MCMC chains to be |
warn |
logical, should warning messages be displayed? |
mess |
logical, should messages be displayed? |
... |
optional arguments passed from |
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