xzhoulab/SPARK: Spatial Pattern Recognition via Kernels

SPARK is an efficient tool for identifying spatial expression patterns. SPARK directly models raw count data generated from various spatial resolved transcriptomic techniques. With a new efficient penalized quasi-likelihood based algorithm, SPARK is scalable to data sets with tens of thousands of genes measured on thousands of samples. Build upon a non-parametric framework, SPARK-X is scalable to large-scale data sets with tens of thousands of genes measured on hundred thousands of samples.

Getting started

Package details

AuthorShiquan Sun, Jiaqiang Zhu, and Xiang Zhou
MaintainerJiaqiang Zhu <jiaqiang@umich.edu>
LicenseGPL-3
Version1.1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("xzhoulab/SPARK")
xzhoulab/SPARK documentation built on Nov. 20, 2022, 2:54 p.m.