CreateSPARKObject | R Documentation |
Create the SPARK object with filtering step
CreateSPARKObject( counts, location, project = "SPARK", percentage = 0.1, min_total_counts = 10 )
counts |
Gene expression count matrix (data.frame), p x n – p is the number of genes and n is the number of cells |
location |
Cell location matrix (data.frame) or two-component of t-SNE/UMAP, n x 2 |
project |
Project names |
percentage |
The percentage of cells that are expressed for analysis |
min_total_counts |
The minimum counts for each cell for filtering |
Returns SPARK object with filtered gene expression matrix
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