README.md

In xzhoulab/SPARK: Spatial Pattern Recognition via Kernels

SPARK

SPARK is an efficient method to identify genes with spatial expression pattern. The intended applications are spatially resolved RNA-sequencing from e.g. Spatial Transcriptomics, slide-seq, or in situ gene expression measurements from e.g. seqFISH, MERFISH.

How to cite SPARK

Shiquan Sun, Jiaqiang Zhu and Xiang Zhou#. Statistical analysis of spatial expression pattern for spatially resolved transcriptomic studies, 2020, Nature Methods, in press.

Jiaqiang Zhu, Shiquan Sun and Xiang Zhou#. SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies, 2021, Genome Biology, in press.

How to use SPARK

Details in here

xzhoulab/SPARK documentation built on Nov. 20, 2022, 2:54 p.m.