Files in yangjl/imputeR
Imputation of GBS genotypes via window phasing
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/AllClasses.R
R/AllGenerics.R
R/ImputeKid.R
R/ImputeParent.R
R/NewPhaseParent.R
R/create_array.R
R/estimate_error.R
R/example.R
R/imputer.R
R/load_data.R
R/mendelian_check.R
R/plotpa.R
R/plotphasing.R
R/sim.array.R
R/utils.R
README.md
imputer.Rproj
man/GBS.array-class.Rd
man/create_array.Rd
man/doc_example.Rd
man/error_probs.Rd
man/estimate_error.Rd
man/get_phased.Rd
man/get_true_GBS.Rd
man/getsfs.Rd
man/hw_probs.Rd
man/imputeRob.Rd
man/impute_kid.Rd
man/impute_parent.Rd
man/join_chunks.Rd
man/mendelian_check.Rd
man/phase_chunk.Rd
man/phase_parent.Rd
man/sim.array.Rd
man/update_gbs_parents.Rd
profiling/bodedata/1.A.1_loading_recoding.R
profiling/cjdata/2.A.1_loading_recoding.R
profiling/simulation/1.A.1_impute_parent_sim.R
profiling/simulation/1.B.1_phase_parent_sim.R
slurm-script/run-landdata.sh
slurm-script/run-teodata.sh
slurm-script/test.sh
test/B73_PI550473.h5
test/simip_out1.csv
test/simip_out2.csv
test/simip_out4.csv
vignettes/imputeR-vignette.Rmd
vignettes/imputeR-vignette.pdf
vignettes/impute_kid.png
vignettes/scheme.pdf
vignettes/sim1_impute_parent.pdf
