GBS.array-class: A S4 class stores genomic data.

In yangjl/imputeR: Imputation of GBS genotypes via window phasing

Description

Stores GBS data of progeny array and parental data, as well as pedigree information. In the GBS data, 0 ref, 1 het, 2 alt and 3 missing.

Slots

true_parents

List of parents' read data. List index must consistent with pedigree.

gbs_parents

List of parents' GBS data.

true_kids

List of progeny's readl data.

gbs_kids

List of progeny's GBS data.

pedigree

Pedigree information.

yangjl/imputeR documentation built on May 4, 2019, 2:28 p.m.