create_array | 'Create GBS.array objects' |
doc_example | Sum of vector elements. |
error_probs | Return error matrices |
estimate_error | 'Estimate genotyping error' |
GBS.array-class | A S4 class stores genomic data. |
get_phased | 'Method for GBS.array' |
getsfs | setup the neutral SFS |
get_true_GBS | 'Method for GBS.array' |
hw_probs | Return HW probs |
impute_kid | 'Phasing and Imputing Kid Genotypes' |
impute_parent | 'Impute Parent Genotype' |
imputeRob | 'Create imputeR object. ' |
join_chunks | 'Joining phased haplotype chunks. ' |
mendelian_check | 'Create GBS.array objects' |
phase_chunk | 'Phasing haplotype chunks. ' |
phase_parent | 'Phasing haplotypes of focal parent' |
sim.array | 'A progeny array simulator.' |
update_gbs_parents | 'Update GBS.array object' |
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