CreateHieR: The main function for creating a reference model.

In yasinkaymaz/HieRFIT: This package provides a utility for information transfer between various data collections using hierarchical random forest

Description

The main function for creating a reference model.

Usage

pbmc.refmod <- CreateRef(RefData = as.matrix(pbmc@data), ClassLabels = [e-mail]$ClusterNames_0.6, TreeFile = pbmc3k_tree)

Arguments

RefData	Reference data from which class labels will be projected on Query data.
ClassLabels	A list of class labels for cells/samples in the Data matrix (Ref). Same length as colnames(Ref).
method	The model training method, "rf" for random forest, "svmLinear" for support vector machine, "hrf" for hierarchical random forest. Default is "hrf"
TreeFile	An input file to create a hierarchical tree for relationship between class labels. Default is null but required if method 'hrf' is chosen.

yasinkaymaz/HieRFIT documentation built on June 1, 2021, 9:37 a.m.