EvaluateCertainty: A function to evaluate performance of HieRFIT with various...

Description Usage Arguments

Description

A function to evaluate performance of HieRFIT with various Certainty thresholds.

Usage

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EvaluateCertainty(RefSeuObj, IdentityCol, RefMod, Uinter = 20,
  perm_n = 10, samp_n = 100)

Arguments

RefSeuObj

reference seurat object.

IdentityCol

the column 'number' in the metadata slot showing the cell type identities.

Uinter

number of intervals to assess certainty threshold.

perm_n

# of permutations.

samp_n

# samples to draw at each permutation.


yasinkaymaz/HieRFIT documentation built on June 1, 2021, 9:37 a.m.