A function to evaluate performance of HieRFIT with various Certainty thresholds.
1 2 | EvaluateCertainty(RefSeuObj, IdentityCol, RefMod, Uinter = 20,
perm_n = 10, samp_n = 100)
|
RefSeuObj |
reference seurat object. |
IdentityCol |
the column 'number' in the metadata slot showing the cell type identities. |
Uinter |
number of intervals to assess certainty threshold. |
perm_n |
# of permutations. |
samp_n |
# samples to draw at each permutation. |
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