HieRFIT: The HieRFIT Class

In yasinkaymaz/HieRFIT: This package provides a utility for information transfer between various data collections using hierarchical random forest

Description

The HieRFIT Class

The main function to project reference data on query in order to identify class labels.

Usage

HieRFIT(Query, refMod, Prior = NULL, xSpecies = NULL, alpha = 0.9)

expRefObj <- get(load("data/exp_refObj.Rdata"))

Arguments

Query	Query data whose components will be labeled with reference data.
refMod	optional input if model exist already. Default is null and generated from scratch. Input can be an caret model object or a .Rdata file.
Prior	prior class labels if exist. For cross comparison. Should correspond row order of the Query.
xSpecies	optional argument to specify cross species information transfer. Default is null. Possible options are 'rat2mouse', 'mouse2rat', 'mouse2human', human2mouse. With respect to model data.

yasinkaymaz/HieRFIT documentation built on June 1, 2021, 9:37 a.m.