xcms-deprecated: Deprecated functions in package 'xcms'
In yclement/xcms: LC-MS and GC-MS Data Analysis
Description
These functions are provided for compatibility with older versions of
‘xcms’ only, and will be defunct at the next release.
Details
The following functions/methods are deprecated.
xcmsPapply: this function is no longer available and the use
of bplapply is suggested.
profBin, profBinM, profBinLin,
profBinLinM, profBinLinBase, profBinLinBaseM
have been deprecated and binYonX in combination
with imputeLinInterpol should be used instead.
extractChromatograms: replaced by chromatogram.
plotChromatogram: replaced by plot method for
Chromatogram or
Chromatograms objects.
extractMsData: replaced by as(x, "data.frame").
plotMsData: replaced by plot(x, type = "XIC").
yclement/xcms documentation built on April 10, 2020, 12:08 a.m.
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Description
These functions are provided for compatibility with older versions of ‘xcms’ only, and will be defunct at the next release.
Details
The following functions/methods are deprecated.
xcmsPapply: this function is no longer available and the use ofbplapplyis suggested.profBin,profBinM,profBinLin,profBinLinM,profBinLinBase,profBinLinBaseMhave been deprecated andbinYonXin combination withimputeLinInterpolshould be used instead.extractChromatograms: replaced bychromatogram.plotChromatogram: replaced byplotmethod forChromatogramorChromatogramsobjects.extractMsData: replaced byas(x, "data.frame").plotMsData: replaced byplot(x, type = "XIC").
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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