dbxml2df: Convert drugbank database (xml file) into dataframe.

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/dbxml_handle.R

Description

Download the original drugbank database http://www.drugbank.ca/releases/latest (xml file) into your current directory and rename as drugbank.xml then run: drugbank_dataframe = dbxml2df(xmlfile="drugbank.xml", version="5.0.10").

Usage

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dbxml2df(xmlfile, version)

Arguments

xmlfile

Character, file path to xml file of drugbank database.

version

Character, drugbank version of the xml file

Value

Dataframe of drugbank xml database.

Note

This process with take about 20 minutes.

Author(s)

Yuzhu Duan yduan004@ucr.edu

References

http://www.drugbank.ca/releases/latest

See Also

df2SQLite

Examples

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## Not run: 
## download the original drugbank database \url{http://www.drugbank.ca/releases/latest} (xml file)

## into your current directory and rename as drugbank.xml

## convert drugbank dabase (xml file) into dataframe: 

drugbank_dataframe <- dbxml2df(xmlfile="drugbank.xml", version="5.0.10")

## End(Not run)

yduan004/drugbankR documentation built on Aug. 10, 2021, 5:21 p.m.