queryDB: Query DrugBank SQLite database.

In yduan004/drugbankR: R package for querying DrugBank database in batch locally

Description

This function can be used to

1. get the entire drugbank dataframe

2. get all the drugbank ids

3. given drugbank ids, determine whether the drugs are FDA approved

4. given drugbank ids, get their targets ids (DrugBank_id, UniProt_id, symbol...).

Usage

queryDB(ids = NULL, type, db_path)

Arguments

ids	character vector, represents DrugBank IDs.
type	one of "getAll","getIDs","whichFDA","getTargets" getAll: get the entire drugbank dataframe, argument ids is ignored getIDs: get all the drugbank ids, argument ids is ignored whichFDA: given drugbank ids, determine whether they are FDA approved getTargets: given drugbank ids, get their targets ids (DrugBank_id, UniProt_id, symbol...).
db_path	Character(1), path to the DrugBank SQLite database generated from dbxml2df and df2SQLite function

Value

getAll: drugbank dataframe

getIDs: character vector of all the drugbank ids

whichFDA: logical vector

getTargets: data.frame containing DrugBank_id, UniProt_id, UniProt_name and gene_symbol of the targets of the query drugs

yduan004/drugbankR documentation built on Aug. 10, 2021, 5:21 p.m.