Man pages for yduan004/signatureSearchData
Datasets for signatureSearch package
| cmap | CMap2 LFC Signature Database |
| cmap_expr | CMap Intensity Signature Database |
| cmap_rank | Cmap Rank Signature Database |
| combineNormRes | Combine Normalized Data from Different Chip Types |
| combineResults | Combine Batch-processed Normalization Results |
| dtlink_db_clue_sti | Drug-Target Annotation Resources |
| ES_NULL | Null Distribution of WTCS from 'gess_lincs' Method |
| getCmapCEL | Download CMap2 CEL Files |
| goAnno | GO Term to Gene SYMBOLs Mapping Annotation |
| goAnno_drug | GO Term ID to Drug Name Mapping Annotation |
| GO_DATA | GO Annotation Environment |
| GO_DATA_drug | GO to Drug Annotation Environment |
| inst_filter | Filter LINCS Level 3 by Condition |
| lincs | LINCS Z-score Signature Database |
| lincs_expr | LINCS Intensity Signature Database |
| meanExpr | Calculate Mean Value for Replicated Samples |
| normalizeCel | Normalize CEL Files |
| probe2gene | Transform Probe Set to Gene Level Data |
| runLimma | DEG Analysis with Limma |
| SampleDEGdata | SampleDEGdata |
| sampleList | Generate List of Treatment vs. Control Samples |
| sig_filter | Filter LINCS Level 5 by Condition |
| signatureSearchData | signatureSearchData: Reference Data for Gene Expression... |
| taurefList | Lookup Table for Computing Tau Scores |
