GO_DATA: GO Annotation Environment

Description See Also Examples

Description

It is an RDS file storing the GO annotation environment (GO term ID to gene SYMBOLs mapping, gene SYMBOL to annotated GO terms, GO term ID to its description, GO term ID to its ontology) used for tsea_* functions in signatureSearch package with GO enrichment analysis. This environment is saved to an RDS file to accelerate the analysis speed by avoiding building this environment from scratch every time running the tsea functions.

See Also

tsea

Examples

1
2
3
4
5
library(ExperimentHub)
eh <- ExperimentHub()
qr <- query(eh, c("signatureSearchData", "GO_DATA"))
go_data <- eh["EH3231"]
# go_data <- eh[["EH3231"]]

yduan004/signatureSearchData documentation built on Nov. 13, 2019, 1:37 p.m.