combineNormRes: Combine Normalized Data from Different Chip Types

Description Usage Arguments Value Examples

View source: R/combineNormRes.R

Description

Function assembles normalization results from different chip types into a single data frame. Note, this is possible since the three chip types used by the CMap2 project contain nearly identical probe set ids. Typically, the input for this step is generated by the upstream normalizeCel and combineResults functions. For more context, please consult the vignette of this package.

Usage

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combineNormRes(chiptype_dir, norm_method)

Arguments

chiptype_dir

character vector containing paths to chiptype directories

norm_method

normalization method, one of "MAS5" or "rma".

Value

Object of class data.frame containing normalization values

Examples

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# chiptype_dir <- unique(readRDS("./data/chiptype.rds"))
combineNormRes(chiptype_dir, norm_method="not run")

yduan004/signatureSearchData documentation built on Nov. 13, 2019, 1:37 p.m.