GO_DATA_drug: GO to Drug Annotation Environment

In yduan004/signatureSearch_data: Datasets for signatureSearch package

GO to Drug Annotation Environment

Description

It is an RDS file storing the GO annotation environment where the gene SYMBOLs are mapped to drug names via drug-target interactions. The GO to drug annotation environment contains GO term ID to drug names, drug name to annotated GO terms, GO term ID to its description and GO term ID to its ontology mappings. This environment is used for dsea_* methods in the signatureSearch package to do GO enrichment analysis directly with test drug set. This environment is stored in an RDS file to accelerate the speed by avoiding building this environment from scratch every time running the dsea functions.

See Also

dsea

Examples

library(ExperimentHub)
eh <- ExperimentHub()
qr <- query(eh, c("signatureSearchData", "GO_DATA"))
go_data_drug <- eh["EH3232"]
# go_data_drug <- eh[["EH3232"]]

yduan004/signatureSearch_data documentation built on April 7, 2023, 5:02 a.m.