combineNormRes: Combine Normalized Data from Different Chip Types

In yduan004/signatureSearch_data: Datasets for signatureSearch package

Combine Normalized Data from Different Chip Types

Description

Function assembles normalization results from different chip types into a single data frame. Note, this is possible since the three chip types used by the CMap2 project contain nearly identical probe set ids. Typically, the input for this step is generated by the upstream normalizeCel and combineResults functions. For more context, please consult the vignette of this package.

Usage

combineNormRes(chiptype_dir, norm_method)

Arguments

chiptype_dir	character vector containing paths to chiptype directories
norm_method	normalization method, one of "MAS5" or "rma".

Value

Object of class data.frame containing normalization values

Examples

# chiptype_dir <- unique(readRDS("./data/chiptype.rds"))
combineNormRes(chiptype_dir, norm_method="not run")

yduan004/signatureSearch_data documentation built on April 7, 2023, 5:02 a.m.