Description Usage Arguments Details Value See Also Examples
View source: R/getOrgMetabolicData.R
This function helps us to obtain the specific-organism pathway map, prasing this maps to get metabolic data contains reaction, substrate and product.
1 | getOrgMetabolicData(org)
|
org, |
characters, the KEGG organism code, e.g. "buc". |
Function getOrgMetabolicData
helps us to download metabolic
data of a given organism from KEGG database with REST-style KEGG API.
Enzyme reactions take place in this organism (org) and its metabolites
(substrates and products), that will be used for organism-specific genome
scale metabolic network reconstruction, can be obtained with this function.
a three length df, consists of enzyme reaction names, substrates and products
1 2 3 4 | ## Not run:
metabolic.data <- getOrgMetabolicData("buc")
## End(Not run)
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