Man pages for yinscapital/retina-analysis-reference
Tools for plotting and analyzing vertebrate retinas.
| add_contours | Print contour lines onto the retina plot |
| add_degrees | Add Degrees |
| add_legend | add a basic legend |
| assemble_markup_file | Assemble markup file |
| assemble_point_coordinates_file | Assemble outline P.csv XY coordinates file |
| assemble_tear_file | Assemble tear file |
| cartesian_rotation | Counterclockwise rotation about the origin |
| composite_map | Make a Composite Map |
| compute_longitude_label_location | Compute Longitude Label Location |
| compute_rotation_matrix | Compute rotation matrix |
| compute_thin_plate_spline_error | Compute fit error at original data points |
| coordinate_IJ | ImageJ Coordinate Conversion |
| count_to_rho | Convert count to Density |
| define_color_breaks_based_on_source | Define Zlim by the requested color breaks source |
| define_contour_breaks | Set Contour Breaks Based on Requested Source |
| degrees | Conversion from Radians to Degrees |
| draw_latitude_markings | Draw Latitude Markings |
| draw_line_segments | draw line segments |
| dss_retistruct_processing | Retistruct Wrapper |
| fit_error_histogram | Single Tps Fit Error Plot |
| fit_plot_azimuthal | Polar Interpolation |
| fit_plots | Retinal Krig Fit Plots |
| getDssRemoved | Constructor for RecontructedDataset object *EDITED |
| import_xyz | import_xyz |
| init_square_mat_plot | Initiate the Square Matrix plot to prepare for polar plotting |
| map_composites | Composite two Retinal Map Matrices |
| map_vec_sum | Compute the matrix sum of multiple retinas |
| mat_from_ret_obj | Extract a matrix from a retinal object |
| Ntae_381-backslash-t | Ntae_381 Retinal object |
| nullify_vals_outside_the_circle | Remove points that are outside of the plotting circle |
| optimal_rotation | Optimal rotation (for min_err) for rotation error matrix... |
| plot_circle_radial_lines | Draw circle radians about the center |
| plot_degree_label_for_latitudes | Interpolate Input Data with Thin Plate Spline |
| plot_falciform_process | Plot falciform process |
| plot_from_MAT | Plot from matrix |
| plot_longitudinal_labels | Plot longitudinal labels |
| plot_longitudinal_lines | Plot longitudinal spoke lines |
| plot_original_xy_locations | plot points of XY |
| plot_radial_spokes_and_labels | Plot radial axes |
| plot_rotation_optimize | Plot rotation optimization scatter plot with minima. |
| Pmol_752 | Pseudodax 752 Retinal object |
| Pmol_753 | Pseudodax 753 Retinal object |
| polynomial_vs_lambda | Polynomial vs Lambda Visualization |
| pretty_list_not_including_max | Create a pretty number list up to but not including the upper... |
| range_len | Distance between the range |
| reef_fish | Reef Fish |
| reflect_across_vertical_line | Reflect matrix across vertical axis |
| reorder_columns | Reorder columns by function |
| retina | retina. |
| retinal_arclen | Retinal Perimeter Estimation (spherical assumption) |
| retinal_phi0 | Rim Latitude Estimation (Ellipsoidal assumption) |
| retina_object | Retinal Object Construction |
| retinaplot | Retina Plot |
| RMat | Internal equation for axis markup |
| rotation_optimize | Rotation error measurement for two similar retinal maps. |
| run_all_demos | Run all demos |
| semi_ellipse_perimeter | Half ellipse perimeter approximation (ellipsoid assumption) |
| sphere_visualize | Spherical Plot visualization Uses retistruct to create... |
| spherical_coords | ImageJ and Retistruction of Input Retinal Data from Flattened... |
| spline.poly | Polygon Spline Fit |
| ssite_merge | Merge Sampling Site location and Counting Frame counts. |
| tear_markup_plot | Tear Markup Plot |
| vector_retina_composite | Generate a retinal composite |
| write_labels_at_endpoint_locations | Write labels at endpoint locations |
