plot_from_MAT: Plot from matrix

In yinscapital/retina-analysis-reference: Tools for plotting and analyzing vertebrate retinas.

Usage

plot_from_MAT(z1, z2, MATRIX, contours = TRUE, legend = TRUE, axes = TRUE,
  points = TRUE, extrapolate = FALSE, col_breaks_source = 2,
  col_levels = 10, col = rev(colorRampPalette(brewer.pal(11,
  "PuOr"))(col_levels)), contour_breaks_source = 1,
  contour_levels = col_levels + 1, outer.radius = pi/2,
  circle.rads = pretty(c(0, outer.radius)), spatial_res = 128,
  single_point_overlay = 0, interp.type = 1, lambda = 0.001,
  xyrelief = 1, ...)

Arguments

z1	Vector of density values (used to get the max and min)
z2	Vector of density values (used to get the max and min)
MATRIX	Matrix object containing densty values at each row and col
contours	whether to plot contours.
legend	Color legend with tick marks
axes	Radial axes
points	whether to plot individual datapoints as X's
extrapolate	By default TRUE, will make plot a circle.
col_breaks_source	2 element vector with max and min
col_levels	number of color levels
col	colors to plot
contour_breaks_source	1 if data, 2 if calculated surface data
contour_levels	number of contour levels
outer.radius	size of plot
circle.rads	radius lines
spatial_res	Used to define a spatial_res by spatial_res plotting resolution.
single_point_overlay	Overlay "key" data point with square (0 = No, Other = number of pt)
interp.type	depreciated
lambda	lambda value for thin plate spline interpolation
xyrelief	scaling factor for interpolation matrix.
...	further arguments passed to or from other methods.

Details

Takes in a square matrix of azimuthal equidistant plot projection points. Generates plot projection.

yinscapital/retina-analysis-reference documentation built on May 22, 2019, 12:40 p.m.