add_contours | Print contour lines onto the retina plot |
add_degrees | Add Degrees |
add_legend | add a basic legend |
assemble_markup_file | Assemble markup file |
assemble_point_coordinates_file | Assemble outline P.csv XY coordinates file |
assemble_tear_file | Assemble tear file |
cartesian_rotation | Counterclockwise rotation about the origin |
composite_map | Make a Composite Map |
compute_longitude_label_location | Compute Longitude Label Location |
compute_rotation_matrix | Compute rotation matrix |
compute_thin_plate_spline_error | Compute fit error at original data points |
coordinate_IJ | ImageJ Coordinate Conversion |
count_to_rho | Convert count to Density |
define_color_breaks_based_on_source | Define Zlim by the requested color breaks source |
define_contour_breaks | Set Contour Breaks Based on Requested Source |
degrees | Conversion from Radians to Degrees |
draw_latitude_markings | Draw Latitude Markings |
draw_line_segments | draw line segments |
dss_retistruct_processing | Retistruct Wrapper |
fit_error_histogram | Single Tps Fit Error Plot |
fit_plot_azimuthal | Polar Interpolation |
fit_plots | Retinal Krig Fit Plots |
getDssRemoved | Constructor for RecontructedDataset object *EDITED |
import_xyz | import_xyz |
init_square_mat_plot | Initiate the Square Matrix plot to prepare for polar plotting |
map_composites | Composite two Retinal Map Matrices |
map_vec_sum | Compute the matrix sum of multiple retinas |
mat_from_ret_obj | Extract a matrix from a retinal object |
Ntae_381-backslash-t | Ntae_381 Retinal object |
nullify_vals_outside_the_circle | Remove points that are outside of the plotting circle |
optimal_rotation | Optimal rotation (for min_err) for rotation error matrix... |
plot_circle_radial_lines | Draw circle radians about the center |
plot_degree_label_for_latitudes | Interpolate Input Data with Thin Plate Spline |
plot_falciform_process | Plot falciform process |
plot_from_MAT | Plot from matrix |
plot_longitudinal_labels | Plot longitudinal labels |
plot_longitudinal_lines | Plot longitudinal spoke lines |
plot_original_xy_locations | plot points of XY |
plot_radial_spokes_and_labels | Plot radial axes |
plot_rotation_optimize | Plot rotation optimization scatter plot with minima. |
Pmol_752 | Pseudodax 752 Retinal object |
Pmol_753 | Pseudodax 753 Retinal object |
polynomial_vs_lambda | Polynomial vs Lambda Visualization |
pretty_list_not_including_max | Create a pretty number list up to but not including the upper... |
range_len | Distance between the range |
reef_fish | Reef Fish |
reflect_across_vertical_line | Reflect matrix across vertical axis |
reorder_columns | Reorder columns by function |
retina | retina. |
retinal_arclen | Retinal Perimeter Estimation (spherical assumption) |
retinal_phi0 | Rim Latitude Estimation (Ellipsoidal assumption) |
retina_object | Retinal Object Construction |
retinaplot | Retina Plot |
RMat | Internal equation for axis markup |
rotation_optimize | Rotation error measurement for two similar retinal maps. |
run_all_demos | Run all demos |
semi_ellipse_perimeter | Half ellipse perimeter approximation (ellipsoid assumption) |
sphere_visualize | Spherical Plot visualization Uses retistruct to create... |
spherical_coords | ImageJ and Retistruction of Input Retinal Data from Flattened... |
spline.poly | Polygon Spline Fit |
ssite_merge | Merge Sampling Site location and Counting Frame counts. |
tear_markup_plot | Tear Markup Plot |
vector_retina_composite | Generate a retinal composite |
write_labels_at_endpoint_locations | Write labels at endpoint locations |
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