fit_plot_azimuthal: Polar Interpolation

In yinscapital/retina-analysis-reference: Tools for plotting and analyzing vertebrate retinas.

Description

This function will make a plot. Code from http://stackoverflow.com/questions/10856882/r-interpolated-polar-contour-plot was highly modified to meet retinal plotting funtionality.

Usage

fit_plot_azimuthal(x, y, z, contours = TRUE, legend = TRUE, axes = TRUE,
  should_plot_points = TRUE, extrapolate = TRUE, col_breaks_source = 2,
  col_levels = 50, col = rev(colorRampPalette(brewer.pal(11,
  "PuOr"))(col_levels)), contour_breaks_source = 1,
  contour_levels = col_levels + 1, outer.radius = pi/2,
  circle.rads = pretty_list_not_including_max(0, outer.radius),
  spatial_res = 1000, single_point_overlay = 0, lambda = 0.001,
  xyrelief = 1, tmp_input = NULL, plot_suppress = FALSE,
  compute_error = FALSE, falciform_coords = NULL, falc2 = NA,
  polynomial_m = NULL, ...)

Arguments

x, y, z	cartesian input in azimuthal format
contours	whether to plot contours.
legend	Color legend with tick marks
axes	Radial axes
extrapolate	By default TRUE, will make plot a circle.
col_breaks_source	2 element vector with max and min
col_levels	number of color levels
col	colors to plot
contour_breaks_source	1 if data, 2 if calculated surface data
contour_levels	number of contour levels
outer.radius	size of plot
circle.rads	radius lines
spatial_res	Used to define a spatial_res by spatial_res plotting resolution.
lambda	lambda value for thin plate spline interpolation
xyrelief	scaling factor for interpolation matrix.
tmp_input	tmp_input
plot_suppress	by default FALSE
compute_error	whether to use fields::predictSE
falciform_coords	vertices in xy format of the falciform process
falc2	a second falficorm coordinate file
polynomial_m	A polynomial function of degree (m-1) will be included in the model as the drift (or spatial trend) component. Default is the value such that 2m-d is greater than zero where d is the dimension of x.
...	passed arguments
points	whether to plot individual datapoints as X's

yinscapital/retina-analysis-reference documentation built on May 22, 2019, 12:40 p.m.