betaDivPlot: Title

In yjiakang/microVisu: Visualize the amplicon data

Title

Description

Title

Usage

betaDivPlot(otuTab, metaData, classToPlot, varAxes = FALSE, col = "Set3")

Arguments

otuTab	otu table of your sample
metaData	design file
classToPlot	which column you want to plot
varAxes	whether to plot the contributive variables (TRUE/FALSE)
col	colour palette: including all the types of the "display.brewer.all()" in the RColorBrewer package

Examples

otu_table_L2.txt <- system.file("extdata", "otu_table_L2.txt", package = "microVisu")
design.txt <- system.file("extdata", "design.txt", package = "microVisu")
betaDivPlot(otuTab = otu_table_L2.txt, metaData = design.txt,
classToPlot = "status", col = "Set3")

yjiakang/microVisu documentation built on July 19, 2023, 10:29 p.m.