pcoaPlot: Title

In yjiakang/microVisu: Visualize the amplicon data

Title

Description

Title

Usage

pcoaPlot(
  distTab,
  metaData,
  distType,
  classForColor,
  classForShape = "None",
  ellipse = FALSE,
  col = "Set3",
)

Arguments

distTab	distance table: bray curtis, weighted/unweighted unifrac distance table
metaData	design file
distType	which kind of distance you use for plot
classForColor	color group
classForShape	shape group
ellipse	add 0.95 ellipse or not | TRUE or FALSE(default)
col	colour palette: including all the types of the "display.brewer.all()" in the RColorBrewer package

Examples

bray <- system.file("extdata", "bray_curtis_otu_table_css.txt", package = "microVisu")
design.txt <- system.file("extdata", "design.txt", package = "microVisu")
pcoaPlot(bray, metaData = design.txt, distType = "Bray Curtis", classForColor = "climate",classForShape = "status",
 col = "Paired")

yjiakang/microVisu documentation built on July 19, 2023, 10:29 p.m.