permanovaTest: Title PERMANOVA

In yjiakang/microVisu: Visualize the amplicon data

Title PERMANOVA

Description

Title PERMANOVA

Usage

permanovaTest(otuTab, metaData, var, method = "bray", permutations = 999)

Arguments

otuTab	otu table of your sample
metaData	design file
var	variables
method	"manhattan", "euclidean", "canberra", "clark", "bray", "kulczynski", "jaccard", "gower", "altGower", "morisita", "horn", "mountford", "raup", "binomial", "chao", "cao", "mahalanobis", "chisq" or "chord".
permutations	permutation times

Examples

otu_table_L2.txt <- system.file("extdata", "otu_table_L2.txt", package = "microVisu")
design.txt <- system.file("extdata", "design.txt", package = "microVisu")
permanovaTest(otu_table_L2.txt, design.txt, "status*cultivars")

yjiakang/microVisu documentation built on July 19, 2023, 10:29 p.m.