NSCLC: Non-small cell lung cancer (NSCLC) dataset

In ymatts/phyC: Clustering cancer evolutional trees

Description

Dataset of non-small cell lung cancer (NSCLC) (Zhang et al., 2014) from the multiregional sequencing variant allele frequency. The dataset contain 10 patients.

Format

A list of 10 VAF matrices

Variables

Variables:

• chrom The number of chromosome

• pos Genomic position

• DESC Description of the position such as the gene symbol.

• normal The VAF of the normal cells.

• Other columns Each column indicates the VAF of each region

Author(s)

Yusuke Matsui & Teppei Shimamura

References

Zhang,J. et al. (2014) Intra-tumor heterogeneity in localized lung adenocarcinomas delineated by multi-region sequencing. Science, 346, 256<c3><a2><e2><82><ac>?259.

ymatts/phyC documentation built on May 4, 2019, 5:31 p.m.