ccRCC: cell renal cell carcinomas (ccRCC) dataset

In ymatts/phyC: Clustering cancer evolutional trees

Description

Dataset of cell renal cell carcinomas (ccRCC) (Gerlinger et al. 2014) from the multiregional sequencing variant allele frequency. The data set contain 8 patients VAFs.

Format

A list of 8 VAF matrices

Variables

Variables:

• chrom The number of chromosome

• pos Genomic position

• DESC Description of the position such as the gene symbol.

• normal The VAF of the normal cells.

• Other columns Each column indicates the VAF of each region

Author(s)

Yusuke Matsui & Teppei Shimamura

References

Gerlinger,M. et al. (2014) Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing. Nat. Genet., 46, 225<c3><a2><e2><82><ac>233.

ymatts/phyC documentation built on May 4, 2019, 5:31 p.m.