Description Usage Arguments Details Value Author(s) Examples
Constructing configuration of trees in clusters and plot
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obj |
Object resulted from phyC. |
color |
Vector of color parameter of each cluster in the plot. |
label |
Vector of labels of trees. Default is "Tree i"(i=1,2,...). |
size |
Size parameter of trees to be plotted in the Euclidean space. Usually, 0 < size < 1. Default is 0.15. |
type |
Type of tree to be plotted. It must be one of "unrooted"(the default), "phylogram", "cladogram", "fan", "radial". |
img.width(/img.height) |
Image width (/ height) of the trees to be overlayed on the Euclidean space. The unit is "px". Default is 200. |
This function performs classical multidimensional scaling with tree distance. The resulting plot includes the trees overlayed on the Euclidean coordinates.
dist Distance used for configuration
coord Coordinate of trees in the Euclidean space.
Yusuke Matsui & Teppei Shimamura
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