ui <- shinyUI(
fluidPage(
sidebarLayout(
sidebarPanel(width=4,
h4('Data Selection'),
fileInput(inputId="mydata", label = "Import Data",multiple = T),
uiOutput('data'),
checkboxInput('showSample','Subset Data'),
conditionalPanel('input.showSample',uiOutput('sample')),
hr(),h4('Data Preprocessing'),
column(width=4,selectizeInput('transpose','Transpose',choices = c('No'=FALSE,'Yes'=TRUE),selected = FALSE)),
column(width=4,selectizeInput("transform_fun", "Transform", c(Identity=".",Sqrt='sqrt',log='log',Scale='scale',Normalize='normalize',Percentize='percentize',"Missing values"='is.na10', Correlation='cor'),selected = '.')),
uiOutput('annoVars'),
br(),hr(),h4('Row dendrogram'),
column(width=6,selectizeInput("distFun_row", "Distance method", c(Euclidean="euclidean",Maximum='maximum',Manhattan='manhattan',Canberra='canberra',Binary='binary',Minkowski='minkowski'),selected = 'euclidean')),
column(width=6,selectizeInput("hclustFun_row", "Clustering linkage", c(Complete= "complete",Single= "single",Average= "average",Mcquitty= "mcquitty",Median= "median",Centroid= "centroid",Ward.D= "ward.D",Ward.D2= "ward.D2"),selected = 'complete')),
column(width=12,sliderInput("r", "Number of Clusters", min = 1, max = 15, value = 2)),
#column(width=4,numericInput("r", "Number of Clusters", min = 1, max = 20, value = 2, step = 1)),
br(),hr(),h4('Column dendrogram'),
column(width=6,selectizeInput("distFun_col", "Distance method", c(Euclidean="euclidean",Maximum='maximum',Manhattan='manhattan',Canberra='canberra',Binary='binary',Minkowski='minkowski'),selected = 'euclidean')),
column(width=6,selectizeInput("hclustFun_col", "Clustering linkage", c(Complete= "complete",Single= "single",Average= "average",Mcquitty= "mcquitty",Median= "median",Centroid= "centroid",Ward.D= "ward.D",Ward.D2= "ward.D2"),selected = 'complete')),
column(width=12,sliderInput("c", "Number of Clusters", min = 1, max = 15, value = 2)),
#column(width=4,numericInput("c", "Number of Clusters", min = 1, max = 20, value = 2, step = 1)),
br(),hr(), h4('Additional Parameters'),
column(3,checkboxInput('showColor','Color')),
column(3,checkboxInput('showMargin','Layout')),
column(3,checkboxInput('showDendo','Dendrogram')),
hr(),
conditionalPanel('input.showColor==1',
hr(),
h4('Color Manipulation'),
uiOutput('colUI'),
sliderInput("ncol", "Set Number of Colors", min = 1, max = 256, value = 256),
checkboxInput('colRngAuto','Auto Color Range',value = T),
conditionalPanel('!input.colRngAuto',uiOutput('colRng'))
),
conditionalPanel('input.showDendo==1',
hr(),
h4('Dendrogram Manipulation'),
selectInput('dendrogram','Dendrogram Type',choices = c("both", "row", "column", "none"),selected = 'both'),
selectizeInput("seriation", "Seriation", c(OLO="OLO",GW="GW",Mean="mean",None="none"),selected = 'OLO'),
sliderInput('branches_lwd','Dendrogram Branch Width',value = 0.6,min=0,max=5,step = 0.1)
),
conditionalPanel('input.showMargin==1',
hr(),
h4('Widget Layout'),
column(4,textInput('main','Title','')),
column(4,textInput('xlab','X Title','')),
column(4,textInput('ylab','Y Title','')),
sliderInput('row_text_angle','Row Text Angle',value = 0,min=0,max=180),
sliderInput('column_text_angle','Column Text Angle',value = 45,min=0,max=180),
sliderInput("l", "Set Margin Width", min = 0, max = 200, value = 130),
sliderInput("b", "Set Margin Height", min = 0, max = 200, value = 40)
)
),
mainPanel(
tabsetPanel(
tabPanel("Heatmaply",
tags$a(id = 'downloadData', class = paste("btn btn-default shiny-download-link",'mybutton'), href = "", target = "_blank", download = NA, icon("clone"), 'Download Heatmap as HTML'),
tags$head(tags$style(".mybutton{color:white;background-color:blue;} .skin-black .sidebar .mybutton{color: green;}") ),
plotlyOutput("heatout",height='600px')
),
tabPanel("Data",
DT::dataTableOutput('tables')
)
)
)
)
)
)
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