Description Usage Arguments Value
Calculates the log-probability of a transmission tree
1 |
ttree |
Transmission tree |
off.r |
First parameter of the negative binomial distribution for offspring number |
off.p |
Second parameter of the negative binomial distribution for offspring number |
pi |
probability of sampling an infected individual |
w.shape |
Shape parameter of the Gamma probability density function representing the generation time |
w.scale |
Scale parameter of the Gamma probability density function representing the generation time |
ws.shape |
Shape parameter of the Gamma probability density function representing the sampling time |
ws.scale |
Scale parameter of the Gamma probability density function representing the sampling time |
dateT |
Date when process stops (this can be Inf for fully simulated outbreaks) |
Probability of the transmission tree
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